Phylogenetic analysis of complete mitochondrial genomes of sheep of the Kuibyshev breed
https://doi.org/10.26897/2074-0840-2022-4-8-11
Abstract
Here, we present the results of a phylogenetic analysis of sheep of the Kuibyshev breed. Complete mitochondrial genome sequences of Russian sheep breed were obtained and then analyzed considering separate mitochondrial markers. The level of polymorphism in separate mitochondrial markers was established. Genetic diversity indicators were calculated for separate mitochondrial genes and for the complete mitochondrial genome. Based on the analysis, a phylogenetic tree was constructed, and the haplogroup assignment of the studied sheep was determined. Regular genetic monitoring will contribute to the accumulation of knowledge on the polymorphisms of all mitochondrial markers. Our study resulted in gaining new knowledge, which deepen the understanding of the role of mitochondrial DNA in the life functions support of sheep.
About the Authors
O. A. KoshkinaRussian Federation
T. E. Deniskova
Russian Federation
N. A. Zinovieva
Russian Federation
References
1. Pushkarev M.G. The state of pedigree sheep and goat breeding in Russia // Scientific developments and innovations in solving strategic tasks of the agro-industrial complex: Materials of the International scientific and practical conference. In 2 volumes, Izhevsk, February 15-18, 2022. – Izhevsk: Izhevsk State Agricultural Academy, 2022. – Рp. 85-87.
2. Lushnikov V.P. Polymorphism of the cast gene in sheep of Tatarstan and Edilbaevsky breeds / V.P. Lushnikov, T.O. Fetisova, A.A. Strilchuk // Sheep, goats, wool business. – 2020. – No. 2. – Рp. 9-11.
3. Abecia J.A. Ewes giving birth to female lambs produce more milk than ewes giving birth to male lambs / J.A. Abecia, C. Palacios // Italian Journal of Animal Science. 2018; 17(3):736-739. doi: 10.1080/1828051X.2017. 1415705.
4. Golik T.V. Spectra of ISSR-PCR Markers in Assessments of the Intrinsic Genetic Differentiation of the Karachai Horse / T.V. Golik, I.I. Gaponova, E.A. Knyaseva, T.A. Erkenov, T.T. Glazko. // Biogeosystem Technique. 2017; 4 (1): 9-24. DOI: 10.13187/bgt.2017.1.9.
5. Glazko V.I. Genetic Structure of Karachai Horses on ISSR-PCR Markers / V.I. Glazko, T.A. Erkenov, T.T. Glazko, K.M. Dzatoev // Biogeosystem Technique. 2016; 9(3):195-204. DOI: 10.13187/bgt.2016.9.195.
6. Deniskova T.E. Assessment of biodiversity in interspecific hybrids of the genus “Ovis” using SPO and SnP markers / T.E. Deniskova, A.V. Dotsev, V.A. Bagirov [et al.] // Agricultural biology. – 2017. – № 52 (2). – Pp. 251-260. – DOI 10.15389/agrobiology.2017.2.251rus.
7. Meadows J.R. Five ovine mitochondrial lineages identified from sheep breeds of the near East / J.R. Meadows, I. Cemal, O. Karaca, E. Gootwine, J.W. Kijas // Genetics. 2007; 175(3): 1371-1379 doi: 10.1534/ge-netics.106.068353.
8. Koshkina O.A. Assessment of maternal variability of Russian local sheep breeds based on the analysis of cytochrome b gene polymorphism / O.A. Koshkina, T.E. Deniskova, A.V. Dotsev [et al.] // Agricultural Biology. – 2021. – № 56 (6). – Pp. 1134-1147. – DOI 10.15389/agrobiology.2021.6.1134rus.
9. Barbato M. Islands as time capsules for genetic diversity conservation: the case of the giglio island mouflon / M. Barbato, M. Masseti, M. Pirastru, N. Columbano, M. Scali, R. Vignani, P. Mereu, // Diversity. 2022; 14(8): 609.
10. Liu J. Phylogeography and phylogenetic evolution in Tibetan sheep based on MT-CYB sequences / J. Liu, Z. Lu, C. Yuan, F. Wang, B. Yang // Animals. 2020; 10(7): 117 (doi: 10.3390/ani10071177).
11. Yu L. Mitogenomic analysis of Chinese snub-nosed monkeys: Evidence of positive selection in NADH dehydrogenase genes in highaltitude adaptation / L. Yu, X. Wang, N. Ting, Y. Zhang // Mitochondrion. 2011; 11(3): 497-503. https://doi.org/10.1186/s12862-017-0896-0.
Review
For citations:
Koshkina O.A., Deniskova T.E., Zinovieva N.A. Phylogenetic analysis of complete mitochondrial genomes of sheep of the Kuibyshev breed. Sheep, goats, wool business. 2022;(4):8-11. (In Russ.) https://doi.org/10.26897/2074-0840-2022-4-8-11